If you are using s6-rc as your service manager, this directory should be the place where you store your compiled service databases. The /etc/s6-init/init-stage2 script invokes s6-rc which expects to find its data here by default. The /run/service/.s6-svscan/SIG{INT,USR1,USR2} scripts invoke s6-rc to bring down all the managed services before shutting down s6-svscan.